Structural transfer zones in a half-graben rift basin play a significant role in controlling sandy sediments and providing a target for hydrocarbon exploration. Previous studies have classified the transfer zone in lacustrine environments into two different patterns: synthetic approaching transfer zones and synthetic overlapping transfer zones. However, the evolution of the depositional pattern and the controlling factors of the above transfer zones are still unclear. In the Fushan Sag, the northern South China Sea, an overlapping transfer zone developed in the early Eocene Epoch, while a synthetic approaching transfer zone developed in the late Eocene, due to tectonic uplift. This evolutionary process provided an opportunity to study the stacking pattern of strata architectural variability and facies distribution in the structural transfer zone of the Eocene lacustrine basin. In this study, following the indications of the oriented sedimentary structures in core samples and heavy mineral assemblages of 18 wells, the evolution of the paleo-hydrodynamic distribution during the early and late Eocene has been reconstructed. The sequence-stratigraphy was then divided and the sand body parameters calculated, according to the seismic data and well log interpretations. During the early Eocene, the lake level was at a low stand, the faults broken displacement in the East block being over 50?m. The prograding delta and turbidites are oriented perpendicular to the structural transfer zone. According to the quantitative analysis of the flow rate and the depositional parameters, we speculate that gravity transportation of the sediment and the sediment-supply are the dominating factors during this period. Up to the late Eocene, the rising lake level and the decreased fault displacement leads the flow to divert to a NE-direction, resulting in it being parallel to the axis of the transfer zone. Thus, we speculate that the accommodation space is predominant in this period. In comparison with the above two periods, a braided river delta with an isolated sand body and turbidites developing in the deep area is prominent in the overlapping transfer zone, while a meandering river delta is characteristic of the synthetic approaching transfer zone.