The Wurinitu Mo deposit is one of the newly found molybdenum deposits in the southwestern part of the late Paleozoic–Mesozoic Erenhot–Dong-Ujimqin metallogenic belt (S-EDMB), Inner Mongolia, China. In the present study, the mineralization age of the Wurinitu deposit is constrained to 137.3 ± 1.3 to 131.9 ± 1.5 Ma based on a combination of the laser ablation–inductively coupled plasma–mass spectrometry (LA–ICP–MS) zircon U–Pb dating of the mineralization related fine-grained monzonitic granite and the post-mineralization granite porphyry. The results of zircon Lu–Hf isotopes, combined with the geochemical characteristics of the granites in the S-EDMB, suggest that the Wurinitu Mo deposit was formed in an extensional environment in relation to the subduction of the Paleo-Pacific plate in late Mesozoic. The Wurinitu deposit shares similarities with the classical Climax-type porphyry molybdenum deposits in tectonic setting, mineral assemblages, and metal zonation.