A large-scale evaporate series is developed in Paleogene-Neogene strata in the Kuqa basin. The series is composed mainly of evaporate with thin beds of clastic rock (mainly mudstone and siltstone). In grayish white medium- and coarse-grained sandstone in Miocene strata, the formation of copper minerals is in close connection with brine. In joint planes, which are developed in vertical strata, are filled with gypsum. Gypsum and copper-mineralized sandstone contains enormous copper minerals, mainly atacamite. According to the SEM analysis for salt rock, gypsum rock, limestone, grayish green siltstone, grayish white medium-coarse-grained sandstone, some minerals are composed of metallic elements including Au, Ag, Cu, Zn, Pb, Co, Ni and U etc., in which Au occurs in a native form, Cu occurs in a native form or as atacamite in salt rock, gypsum rock and limestone, Ag occurs as silver sulfide in gypsum, and Zn, Pb, Co, Ni, U occur as compounds along with the above metallic ions in evaporate or clastic rock. From SEM images, we can see that metallic elements or their compounds (oxides or sulfides) “take root” as grains in salt or gypsum crystals, which belong to primary chemical sedimentation along with evaporate, while some grains “float” on surface of salt or gypsum. In the former case, mineral grains were formed together with salt (gypsum) crystals; while in the latter case, minerals were enriched from internal metallic ions (Paleogene evaporate samples) or external metallic ions (Neogene gypsum samples) in the late stage of evaporate formation. The metallic ions in Paleogene evaporate samples might originate from weathered or denudated materials in the south Tianshan Mountains. The metallic ions in the Neogene evaporate samples might be from metal-bearing brine, which migrated upward to surface along fractures and leached into evaporate (gypsum). Occurrence of metallic minerals and their compounds (elementary substance) in Paleogene evaporate proves that diversified metallic minerals exist in evaporate. The source of metallic ions in the Neogene evaporate series shows that evaporate could provide materials for late-stage metallic mineralization.