Sedimentary sequences in the Subei Basin are complex and have been affected by interactions between the ocean and rivers since the Late Pliocene, including the Yellow River, Huaihe River, and the Yangtze River. This sedimentary evolution, in particular the timing of Pleistocene transgressions, has long been a matter of controversy owing to the lack of precise chronological evidence. The aim of this study is to explore the evolution of the sedimentary environment throughout the past 3.00?Ma in this region on the basis of a comprehensive analysis of particle size and foraminifera and ostracods collected in the TZK9 core from the Subei Basin combined with geochronological studies of magnetostratigraphy, AMS14C and optically stimulated luminescence (OSL). The results show that fluvial facies in the sedimentary environment from 3.00 to 1.01?Ma. There were fluvial facies and reflects six sea-level high stands from 1.01 to 0.25?Ma. The study area was affected by four large-scale transgressions since 0.25?Ma. The four marine sedimentary layers known as DU7 (buried at 48–52?m), DU5 (buried at 35–41?m), DU3 (buried at 16–23?m), and DU1 (buried at 2–4?m) are recorded in the MIS7 (210–250?ka), MIS5, MIS3, and Holocene, respectively. The magnitude of the DU5 transgression was identical to that of the DU3 transgression, both were larger than the DU7 transgression, and the DU1 transgression was the weakest. The variation of transgression strength reflects the influence of global changes in sea level, tectonic subsidence, shell ridges, and sand dams. In the TZK9 core, we found evidence of seven sea-level high stands from the Early–Middle Pleistocene, and the first one caused by regional rapid subsidence and could be traced back to 0.83-0.84 Ma. The sea-level high stands and the age of the first one recorded above was different from other cores in eastern China, this was caused by the lack of absolute age control and the differences in paleotopography during this period. This study reconstructs sedimentary evolution, determines the transgression and its age, establishes the chronology since the Late Pliocene, and provides a scientific framework for further paleoenvironmental and tectonic studies. The results of this study highlight the important role that local tectonics and global sea level play in the sedimentary evolution and transgressions that have occurred in the western Subei Basin.